simba.pl.violin
- simba.pl.violin(adata, list_obs=None, list_var=None, jitter=0.4, size=1, log=False, pad=1.08, w_pad=None, h_pad=3, fig_size=(3, 3), fig_ncol=3, save_fig=False, fig_path=None, fig_name='plot_violin.pdf', **kwargs)[source]
Violin plot
- Parameters:
adata (Anndata) – Annotated data matrix.
list_obs (list, optional (default: None)) – A list of observations to plot.
list_var (list, optional (default: None)) – A list of variables to plot.
jitter (float, optional (default: 0.4)) – Amount of jitter to apply.
size (int, optional (default: 1)) – The marker size
log (bool, optional (default: False)) – If True, natural logarithm transformation will be performed.
pad (float, optional (default: 1.08)) – Padding between the figure edge and the edges of subplots, as a fraction of the font size.
h_pad (float, optional (default: None)) – Padding (height/width) between edges of adjacent subplots, as a fraction of the font size. Defaults to pad.
w_pad (float, optional (default: None)) – Padding (height/width) between edges of adjacent subplots, as a fraction of the font size. Defaults to pad.
fig_size (tuple, optional (default: (3,3))) – figure size.
fig_ncol (int, optional (default: 3)) – the number of columns of the figure panel
save_fig (bool, optional (default: False)) – if True,save the figure.
fig_path (str, optional (default: None)) – If save_fig is True, specify figure path.
fig_name (str, optional (default: ‘plot_violin.pdf’)) – if save_fig is True, specify figure name.
**kwargs (dict, optional) – Other keyword arguments are passed through to
sns.violinplot
- Return type:
None