Installation
Anaconda
For first-time conda users, perform a one-time set up of Bioconda with the following commands:
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda config --set channel_priority strict
To install simba with conda, run:
conda install -c bioconda simba
Recommended: install simba in a new virtual enviroment:
conda create -n env_simba simba
conda activate env_simba
Dev version
To install the latest version on GitHub,
first install simba_pbg
conda install -c bioconda simba_pbg
then run:
git clone https://github.com/huidongchen/simba.git
pip install simba --user
or:
pip install git+https://github.com/huidongchen/simba