simba.pp.binarize

simba.pp.binarize(adata, threshold=1e-05)

Binarize an array. :param adata: Annotated data matrix. :type adata: AnnData :param threshold: Values below or equal to this are replaced by 0, above it by 1. :type threshold: float, optional (default: 1e-5)

Returns:

• updates adata with the following fields.

• X (numpy.ndarray (adata.X)) – Store #observations × #var_genes binarized data matrix.