simba.pp.log_transform

simba.pp.log_transform(adata)

Return the natural logarithm of one plus the input array, element-wise.

Parameters:

adata (AnnData) – Annotated data matrix.

Returns:

• updates adata with the following fields.

• X (numpy.ndarray (adata.X)) – Store #observations × #var_genes logarithmized data matrix.